Publications

Publications since opening the lab:

Preprints:

  • Garabello, E., Yoon, H., Reid, M.C., Giometto, A. (2024). Tunable Low-Rate Genomic Recombination with Cre-lox in E. coli: A Versatile Tool for Synthetic Biology and Environmental Sensing. bioRxiv 2024.10.02.616356. Link
  • Wang, M., Vladimirsky, A., Giometto, A. (2024). Overcoming toxicity: why boom-and-bust cycles are good for non-antagonistic microbes. bioRxiv 2024.08.09.607393. Link
  • Xiao, X., Singh, A., Giometto, A., Brito, I. (2024). Segatella copri strains adopt distinct roles within a single individual’s gut. bioRxiv 2024.05.20.595015. Link

Journal articles:

  1. Liu, F., Gaul, L., Giometto, A., Wu, M. (2024). A high throughput array microhabitat platform reveals how light and nitrogen colimit the growth of algal cells. Scientific Reports 14, 9860. Link
  2. Yoon, H., Vega, M.A.P., Wang, J., Poulain, A.J., Giometto, A., Aristilde, L., Reid, M.C. (2024). Repression of Microbial Arsenite Uptake and Methylation by Dissolved Organic Carbon. Environmental Science & Technology Letters, in press. Link
  3. Acemoglu, D., Fallah, A., Giometto, A., Huttenlocher, D., Ozdaglar, A., Parise, F. and Pattathil, S. (2024). Optimal adaptive testing for epidemic control: combining molecular and serology tests. Automatica 160, 111391. Link
  4. Lustenhouwer, N., Moerman, F., Altermatt, F., Bassar, R. D., Bocedi, G., Bonte, D., Dey, S., Fronhofer, E. A., da Rocha, É. G., Giometto, A., Lancaster, L. T., Prather R. B. Jr, Saastamoinen, M., Travis, J. M. J., Urquhart, C. A., Weiss-Lehman, C., Williams, J. L., Börger, L., Berger, D. (2023) Experimental evolution of dispersal: Unifying theory, experiments and natural systems. Journal of Animal Ecology. Link
  5. Yoon, H., Giometto, A., Pothier, M. P., Zhang, X., Poulain, A.J., Reid, M. C. (2022). Time-Dependent Biosensor Fluorescence as a Measure of Bacterial Arsenic Uptake Kinetics and Its Inhibition by Dissolved Organic Matter. Applied and Environmental Microbiology 88(16), e00891-22. Link
  6. Giometto, A., Nelson, D. R. and Murray, A. W. (2021). Antagonism between killer yeast strains as an experimental model for biological nucleation dynamics. eLife 10:e62932. Link
  7. Pacciani-Mori, L., Suweis, S., Maritan, A. and Giometto, A. (2021). Constrained proteome allocation affects coexistence in models of competitive microbial communities. The ISME JournalLink
  8. Liu, F., Giometto, A. and Wu, M. (2020). Microfluidic and mathematical modeling of aquatic microbial communities. Analytical and Bioanalytical ChemistryLink

Publications from the PI before the lab opened:

  1. Pacciani-Mori, L., Giometto, A., Suweis, S. and Maritan, A. (2020). Dynamic metabolic adaptation can promote species coexistence in competitive communities. PLoS Computational Biology 16(5), e1007896. Link
  2. Zaoli, S., Giometto, A., Marañón, E., Escrig, S., Meibom, A., Ahluwalia, A., Stocker, R., Maritan, A. and Rinaldo, A. (2019) Generalized size scaling of metabolic rates based on single-cell measurements with freshwater phytoplankton. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 116(35), 17323-17329. Link
  3. Zaoli, S., Giometto, A., Giezendanner, J., Maritan, A. and Rinaldo, A. (2019). On the probabilistic nature of the species-area relation. Journal of Theoretical Biology 462, 391-407. Link
  4. Giometto, A., Nelson, D. R. and Murray, A. W. (2018). Physical interactions reduce the power of natural selection in growing yeast colonies. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 115(45), 11448-11453. Link
  5. Giometto, A., Altermatt, F. and Rinaldo, A. (2017). Demographic stochasticity and resource autocorrelation control biological invasions in heterogeneous landscapes. Oikos 126(11), 1554-1563. Link
  6. Strano, E., Giometto, A., Shai, S., Bertuzzo, E., Mucha, P. J. and Rinaldo, A. (2017). The scaling structure of the global road network. Royal Society Open Science 4(10), 170590. Link
  7. Zaoli, S., Giometto, A., Maritan, A. and Rinaldo, A. (2017) Covariations in ecological scaling laws fostered by community dynamics. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 114(40), 10672-10677. Link
  8. Carrara, F., Giometto, A., Seymour, M., Rinaldo, A. and Altermatt, F. (2015) Inferring species interactions in ecological communities: a comparison of methods at different levels of complexity. Methods in Ecology and Evolution 6(8), 895-906. Link
  9. Giometto, A., Formentin, M., Rinaldo, A., Cohen, J. E. and Maritan, A. (2015). Sample and population exponents of generalized Taylor’s law. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 112(25), 7755–7760. Link
  10. Giometto, A., Altermatt, F., Maritan, A., Stocker, R. and Rinaldo, A. (2015). Generalized receptor law governs phototaxis in the phytoplankton Euglena gracilis. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 112(22), 7045–7050. Link
  11. Carrara, F., Giometto, A., Seymour, M., Rinaldo, A. and Altermatt, F. (2015). Experimental evidence for strong stabilizing forces at high functional diversity of aquatic microbial communities. Ecology 96(5), 1340-1350. Link
  12. Altermatt, F., Fronhofer, E. A., Garnier, A., Giometto, A., Hammes, F., Klecka, J., Legrand, D., Mächler, E., Massie, T. M., Pennekamp, F., Plebani, M., Pontarp, M., Schtickzelle, N., Thuillier, V. and Petchey, O. L. (2015) Big answers from small worlds: a user’s guide for protist microcosms as a model system in ecology and evolution. Methods in Ecology and Evolution 6(2), 218-231. Link
  13. Giometto, A., Rinaldo, A., Carrara, F. and Altermatt, F. (2014). Emerging predictable features of replicated biological invasion fronts. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 111(1), 297–301. Link
  14. Carrara, F., Rinaldo, A., Giometto, A. and Altermatt, F. (2014). Complex interaction of dendritic connectivity and hierarchical patch size on biodiversity in river-like landscapes. The American Naturalist 183(1), 13-25. Link
  15. Giometto, A., Altermatt, F., Carrara, F., Maritan, A. and Rinaldo, A. (2013). Scaling body size fluctuations. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 110(12), 4646– 4650. Link
  16. Giometto, A. and Jensen, H. J. (2012). Connecting the microdynamics to the emergent macrovariables: Self-organized criticality and absorbing phase transitions in the deterministic lattice gas. Physical Review E 85(1), 011128. Link